Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2702PFAM: class II aldolase/adducin family protein. (244 aa)    
Predicted Functional Partners:
Swit_1648
PFAM: class II aldolase/adducin family protein.
  
     0.774
Swit_2975
Citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.602
Swit_3238
PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.602
Swit_2703
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
       0.511
Swit_2411
PFAM: cytochrome c, class I.
 
 
  0.500
Swit_4687
PFAM: cytochrome c, class I.
 
 
  0.492
Swit_2699
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
 
     0.490
Swit_3255
PFAM: cytochrome c, class I.
 
 
  0.485
Swit_4131
PFAM: cytochrome c, class I.
 
 
  0.485
Swit_2821
PFAM: Ankyrin.
   
 0.463
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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