Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_2740Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (87 aa)    
Predicted Functional Partners:
Swit_2739
PFAM: plasmid stabilization system.
 
  
 0.972
Swit_2741
TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490.
       0.621
Swit_2742
PFAM: protein of unknown function DUF140.
 
     0.518
Swit_2743
PFAM: ABC transporter related; SMART: AAA ATPase.
       0.451
Swit_2744
PFAM: Mammalian cell entry related domain protein.
       0.450
Swit_2745
ABC-type uncharacterized transport system auxiliary component-like protein.
       0.450
nadE
NAD(+) synthase (glutamine-hydrolyzing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
     0.428
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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