Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2789PFAM: ATPase MipZ. (267 aa)    
Predicted Functional Partners:
Swit_2790
PFAM: heat shock protein DnaJ domain protein.
   
   0.817
Swit_2791
Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III.
     
 0.775
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.761
Swit_2449
TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein.
  
     0.709
Swit_1578
PFAM: DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.680
Swit_2849
Chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; Belongs to the ParB family.
  
 
 0.678
Swit_3503
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; Belongs to the ParB family.
  
 
 0.678
Swit_2853
Hypothetical protein.
 
     0.673
Swit_2787
PFAM: Sel1 domain protein repeat-containing protein.
       0.650
Swit_3672
PFAM: ParB domain protein nuclease.
  
 
 0.639
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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