STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2804Membrane-like protein. (941 aa)    
Predicted Functional Partners:
Swit_2803
Hypothetical protein.
 
  
 0.973
Swit_2805
Hypothetical protein.
       0.553
Swit_3283
PFAM: helix-turn-helix domain protein.
  
     0.537
Swit_3595
PFAM: major facilitator superfamily MFS_1.
 
     0.449
Swit_3244
PFAM: beta-lactamase domain protein; metal-dependent phosphohydrolase, HD sub domain.
 
     0.408
Swit_2806
PFAM: protein of unknown function DUF188; Belongs to the UPF0178 family.
       0.404
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.