Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_2810TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase. (199 aa)    
Predicted Functional Partners:
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
    
  0.902
Swit_2809
Hypothetical protein.
       0.686
Swit_2779
PFAM: Ferritin, Dps family protein; Belongs to the Dps family.
  
  
 0.636
Swit_3732
PFAM: Ferritin, Dps family protein; Belongs to the Dps family.
  
  
 0.636
Swit_2844
Hypothetical protein.
   
  
 0.634
Swit_2811
PFAM: Pirin domain protein domain protein; Belongs to the pirin family.
       0.621
Swit_4572
PFAM: isochorismatase hydrolase.
  
  
 0.553
Swit_2812
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
       0.532
Swit_4767
PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein.
  
 
 0.468
Swit_1373
PFAM: Class I peptide chain release factor.
       0.466
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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