Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_2822PFAM: GCN5-related N-acetyltransferase. (144 aa)    
Predicted Functional Partners:
Swit_2823
PFAM: protein of unknown function DUF1052.
       0.570
Swit_2826
PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
  
  
 0.518
Swit_2824
Hypothetical protein.
       0.505
hpf
SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.480
Swit_2825
PFAM: thioesterase superfamily protein.
     
 0.478
Swit_4521
Membrane-like protein.
  
    0.453
Swit_2382
PFAM: peptidase M22, glycoprotease.
  
 
 0.436
Swit_3576
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
 
    0.427
Swit_2165
Transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein.
 
 
 0.400
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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