Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2853Hypothetical protein. (197 aa)    
Predicted Functional Partners:
Swit_2851
Secreted (periplasmic)-like protein.
 
     0.945
leuS
TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.903
Swit_2850
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta.
 
     0.883
Swit_1931
PFAM: SmpA/OmlA domain protein.
  
     0.763
Swit_3125
SMART: Pyrrolo-quinoline quinone.
  
     0.751
Swit_2854
Hypothetical protein.
       0.744
Swit_2449
TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein.
  
     0.737
Swit_0410
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA N-terminal domain.
  
   
 0.708
Swit_3565
SMART: helicase c2.
  
     0.696
Swit_0495
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain.
  
     0.673
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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