Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_2867PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B. (273 aa)    
Predicted Functional Partners:
Swit_4570
PFAM: Pirin domain protein domain protein; Pirin domain protein; Belongs to the pirin family.
 
  
 0.680
Swit_2811
PFAM: Pirin domain protein domain protein; Belongs to the pirin family.
 
  
 0.663
Swit_4321
PFAM: Pirin domain protein domain protein; Pirin domain protein; Belongs to the pirin family.
 
  
 0.621
Swit_3775
PFAM: Rhodanese domain protein.
    
 0.571
Swit_2866
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
     
 0.570
Swit_2868
PFAM: protein of unknown function UPF0118.
       0.532
Swit_3868
PFAM: ferredoxin; [2Fe-2S]-binding domain protein.
     
 0.484
Swit_3087
TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.407
Swit_4270
TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.407
Swit_4314
PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.407
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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