Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
Swit_2902PFAM: Integral membrane protein TerC. (246 aa)    
Predicted Functional Partners:
Swit_2321
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region.
    
 0.907
Swit_2903
PFAM: 3'-5' exonuclease.
       0.761
Swit_2901
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein.
       0.679
Swit_2904
PFAM: protein of unknown function DUF1239.
       0.656
Swit_2905
PFAM: OstA family protein.
  
    0.569
Swit_2906
PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.415
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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