Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_2973Signal transduction histidine kinase, LytS; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region. (369 aa)    
Predicted Functional Partners:
Swit_2974
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region.
 
 
 0.985
Swit_4495
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region.
 
 
 0.882
Swit_2975
Citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.736
Swit_1463
Hypothetical protein.
  
     0.529
Swit_3222
Response regulator receiver protein; PFAM: LytTr DNA-binding region.
  
 
 0.519
Swit_0407
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
     0.512
Swit_2693
Hypothetical protein.
  
     0.482
Swit_0449
PFAM: polysaccharide biosynthesis protein.
 
     0.481
Swit_0857
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
 
   
 0.470
Swit_0010
Hypothetical protein.
  
     0.444
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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