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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3003PFAM: peptidase M28. (558 aa)    
Predicted Functional Partners:
Swit_0237
PFAM: peptidase M20; peptidase M28.
 
     0.699
Swit_0915
Hypothetical protein.
 
  
 0.652
Swit_0534
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
 
 0.625
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.610
Swit_2291
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.608
Swit_2754
TIGRFAM: aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase-like.
   
 
 0.606
Swit_3129
PFAM: peptidase M16 domain protein.
 
   
 0.598
Swit_2753
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase.
  
  
 0.593
Swit_3766
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.592
Swit_2952
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; WD40 domain protein beta Propeller.
 
    0.591
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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