Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3003PFAM: peptidase M28. (558 aa)    
Predicted Functional Partners:
Swit_0237
PFAM: peptidase M20; peptidase M28.
 
     0.698
Swit_0915
Hypothetical protein.
 
  
 0.643
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.610
Swit_2291
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.608
Swit_2754
TIGRFAM: aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase-like.
  
 
 0.608
Swit_2952
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; WD40 domain protein beta Propeller.
 
    0.598
Swit_3766
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.592
Swit_4223
PFAM: Carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family.
 
 0.586
Swit_4266
PFAM: Carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family.
 
 0.586
Swit_1619
PFAM: Carboxylesterase, type B.
 
 0.576
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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