STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3044PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (775 aa)    
Predicted Functional Partners:
Swit_3144
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.848
Swit_0540
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
   
 0.811
Swit_3043
PFAM: sulfatase.
  
    0.778
Swit_1596
Outer membrane receptor protein mostly Fe transport-like protein.
  
     0.756
Swit_4318
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.696
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.681
Swit_3042
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
       0.678
Swit_1191
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.670
Swit_4363
PFAM: methylamine dehydrogenase heavy subunit.
  
  
 0.663
Swit_1810
PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug.
  
     0.658
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.