STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3047PFAM: Phytanoyl-CoA dioxygenase. (278 aa)    
Predicted Functional Partners:
Swit_3048
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.714
Swit_3046
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.637
Swit_3045
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
  
  
 0.558
Swit_3049
Hypothetical protein.
       0.503
Swit_0939
PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.
  
 
 0.477
Swit_2618
PFAM: FAD dependent oxidoreductase.
  
 
 0.467
Swit_1620
PFAM: Cupin 2, conserved barrel domain protein.
 
   
 0.457
Swit_0138
PFAM: FAD linked oxidase domain protein.
  
 0.435
Swit_0734
PFAM: FAD linked oxidase domain protein.
  
 0.435
Swit_0991
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein.
  
 0.435
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.