STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3073PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR. (250 aa)    
Predicted Functional Partners:
Swit_3072
Thioesterase-like protein.
  
 
 0.819
Swit_3074
PFAM: Hydantoinase B/oxoprolinase.
       0.780
Swit_3075
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein.
       0.780
Swit_3071
PFAM: Glutathione S-transferase, N-terminal domain.
   
 
 0.643
Swit_3078
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.
 
    
0.628
Swit_3403
PFAM: short-chain dehydrogenase/reductase SDR; KR.
  
     0.609
Swit_3077
PFAM: major facilitator superfamily MFS_1.
  
  
 0.554
Swit_3076
PFAM: protein of unknown function DUF849.
  
    0.542
Swit_3079
PFAM: beta-lactamase.
       0.510
Swit_3080
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
  
 0.483
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.