Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3092Hypothetical protein. (447 aa)    
Predicted Functional Partners:
Swit_2769
Hypothetical protein.
 
     0.709
Swit_3091
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
     
 0.655
Swit_3093
PFAM: protein of unknown function DUF849.
       0.648
Swit_3094
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.432
Swit_3459
Hypothetical protein.
  
 
 0.428
Swit_3805
PFAM: lipolytic enzyme, G-D-S-L family.
  
 
 0.428
Swit_4695
PFAM: lipolytic enzyme, G-D-S-L family.
  
 
 0.428
Swit_1160
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.407
Swit_3997
GSCFA; PFAM: GSCFA.
  
 
 0.404
Swit_3095
Hypothetical protein.
       0.402
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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