Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3095Hypothetical protein. (140 aa)    
Predicted Functional Partners:
Swit_2274
Uncharacterized protein.
 
     0.749
Swit_3094
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.709
Swit_1431
Hypothetical protein.
 
     0.654
Swit_2256
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.613
Swit_2257
PFAM: short-chain dehydrogenase/reductase SDR; KR.
  
     0.533
Swit_3278
Hypothetical protein.
  
     0.497
Swit_3093
PFAM: protein of unknown function DUF849.
       0.468
Swit_0675
Hypothetical protein.
 
     0.466
Swit_3096
PFAM: ferredoxin; cytochrome P450; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
       0.462
Swit_1922
Hypothetical protein.
 
    0.455
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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