STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3100Hypothetical protein. (503 aa)    
Predicted Functional Partners:
Swit_3102
PFAM: glutamine amidotransferase class-I.
       0.778
Swit_3101
PFAM: polysaccharide deacetylase.
     
 0.775
Swit_3103
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.773
Swit_3098
PFAM: Ankyrin.
  
 0.627
Swit_3099
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
       0.523
Swit_1767
PFAM: amidohydrolase 2.
  
     0.506
Swit_4360
Hypothetical protein.
   
   0.489
Swit_2821
PFAM: Ankyrin.
  
 0.453
Swit_3645
PFAM: amidohydrolase 2.
  
     0.447
Swit_3654
PFAM: amidohydrolase 2.
  
     0.431
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.