Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_3101PFAM: polysaccharide deacetylase. (299 aa)    
Predicted Functional Partners:
Swit_3102
PFAM: glutamine amidotransferase class-I.
  
    0.786
Swit_3100
Hypothetical protein.
       0.773
Swit_3103
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.773
Swit_4037
Hypothetical protein.
 
   
 0.540
Swit_3099
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
     
 0.536
Swit_4038
PFAM: glycosyl transferase, group 1.
 
  
 0.440
Swit_4032
TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: lipopolysaccharide biosynthesis protein.
 
   
 0.429
Swit_3440
Multi-sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase, putative; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein.
 
   
 0.428
Swit_3104
PFAM: protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
       0.417
Swit_1485
Uncharacterized protein.
  
     0.410
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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