Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_3122Uncharacterized protein. (87 aa)    
Predicted Functional Partners:
Swit_2716
PFAM: protein of unknown function DUF1321.
  
   
 0.783
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.737
Swit_3121
TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; Belongs to the pyruvate kinase family.
       0.723
Swit_0020
PFAM: protein of unknown function DUF1013.
  
   
 0.719
Swit_4584
PFAM: protein of unknown function DUF1058.
 
     0.682
rpsU
PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.617
Swit_3534
PFAM: uncharacterised conserved protein UCP032025.
  
     0.605
Swit_2680
TIGRFAM: Double-strand break repair protein AddB.
  
     0.601
Swit_2555
PFAM: NADH:ubiquinone oxidoreductase 17.2 kDa subunit.
  
   
 0.585
Swit_1931
PFAM: SmpA/OmlA domain protein.
  
     0.583
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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