Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_3142PFAM: Tetratricopeptide TPR_2 repeat protein. (504 aa)    
Predicted Functional Partners:
Swit_3143
PFAM: Aspartyl/Asparaginyl beta-hydroxylase.
 
    0.832
Swit_3141
PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
     
 0.785
Swit_0794
PFAM: Tetratricopeptide TPR_4.
 
     0.541
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.539
Swit_4015
PFAM: ABC-2 type transporter.
 
   
 0.527
Swit_4014
Capsule polysaccharide export-like protein.
 
    0.518
Swit_3144
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
     0.509
Swit_4506
Uncharacterized protein.
 
  
 0.483
Swit_4409
Peptidase M24; PFAM: creatinase; peptidase M24.
 
     0.455
Swit_2153
Hypothetical protein.
 
     0.444
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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