STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3192PFAM: Tetratricopeptide TPR_2 repeat protein. (1036 aa)    
Predicted Functional Partners:
Swit_3190
PFAM: Polypeptide-transport-associated domain protein, ShlB-type.
 
     0.954
Swit_3191
TIGRFAM: filamentous haemagglutinin family outer membrane protein.
 
     0.950
Swit_0226
Hypothetical protein.
 
     0.778
Swit_0588
Hypothetical protein.
 
     0.778
Swit_0224
Hypothetical protein.
 
     0.774
Swit_0590
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
  
 0.773
Swit_0589
Hypothetical protein.
 
     0.770
Swit_0223
PFAM: LVIVD repeat protein.
 
     0.769
Swit_1382
Hypothetical protein.
 
     0.763
Swit_2398
Hypothetical protein.
 
     0.753
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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