Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3200TIGRFAM: lycopene cyclase; lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase. (380 aa)    
Predicted Functional Partners:
Swit_3199
PFAM: conserved hypothetical protein 730; Belongs to the LOG family.
       0.870
Swit_3196
PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like.
  
 
 0.822
Swit_4100
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.751
Swit_0855
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
 
     0.677
Swit_2745
ABC-type uncharacterized transport system auxiliary component-like protein.
 
     0.610
Swit_2542
Hypothetical protein.
  
     0.603
Swit_3195
PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like.
  
 
 0.597
Swit_2398
Hypothetical protein.
  
     0.593
Swit_0884
Hypothetical protein.
  
    0.591
Swit_0600
Hypothetical protein.
 
   
 0.552
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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