Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3228PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein. (627 aa)    
Predicted Functional Partners:
Swit_0105
PFAM: peptidase M61 domain protein.
  
   
 0.687
Swit_4782
PFAM: PDZ/DHR/GLGF domain protein; peptidase M61 domain protein.
  
     0.684
Swit_0029
PFAM: peptidase M28.
 
    0.630
Swit_1824
PFAM: peptidase M28.
 
    0.626
Swit_4625
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.611
Swit_2578
PFAM: peptidase M20; peptidase M28.
 
    0.610
Swit_1484
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.581
Swit_3227
Anthranilate synthase, component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I.
     
 0.559
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
       0.535
Swit_3003
PFAM: peptidase M28.
 
    0.515
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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