STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3248PFAM: histone deacetylase superfamily. (369 aa)    
Predicted Functional Partners:
Swit_3249
Hypothetical protein.
       0.774
Swit_1494
SMART: nuclear protein SET.
  
 0.758
Swit_4155
PFAM: amine oxidase; FAD dependent oxidoreductase.
   
 0.750
Swit_0196
PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like.
   
 0.723
Swit_0794
PFAM: Tetratricopeptide TPR_4.
    
 0.673
Swit_3247
PFAM: Amidase.
   
   0.642
Swit_3244
PFAM: beta-lactamase domain protein; metal-dependent phosphohydrolase, HD sub domain.
 
 
   0.632
Swit_3246
PFAM: amidohydrolase; Amidohydrolase 3.
       0.577
Swit_2602
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
 
 0.554
Swit_2821
PFAM: Ankyrin.
   
 0.554
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.