Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_3249Hypothetical protein. (232 aa)    
Predicted Functional Partners:
Swit_3248
PFAM: histone deacetylase superfamily.
       0.773
Swit_3247
PFAM: Amidase.
       0.618
Swit_3246
PFAM: amidohydrolase; Amidohydrolase 3.
       0.586
Swit_3245
PFAM: Amidohydrolase 3.
       0.543
Swit_3243
PFAM: amidohydrolase; Amidohydrolase 3.
       0.514
Swit_3244
PFAM: beta-lactamase domain protein; metal-dependent phosphohydrolase, HD sub domain.
       0.506
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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