STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3256PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (730 aa)    
Predicted Functional Partners:
Swit_3144
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.847
Swit_3032
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.766
Swit_4318
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.743
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.733
Swit_3766
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.730
Swit_3255
PFAM: cytochrome c, class I.
       0.705
Swit_3254
PFAM: methylamine dehydrogenase heavy subunit.
  
    0.687
Swit_4363
PFAM: methylamine dehydrogenase heavy subunit.
  
  
 0.663
Swit_3250
Hypothetical protein.
       0.651
Swit_3251
Amine dehydrogenase; Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin; Belongs to the aromatic amine dehydrogenase light chain family.
       0.651
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.