Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3267PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the hyi family. (266 aa)    
Predicted Functional Partners:
Swit_1902
PFAM: Xylose isomerase domain protein TIM barrel.
 
   
 0.717
Swit_3266
PFAM: Rieske [2Fe-2S] domain protein.
       0.580
Swit_3265
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
     
 0.546
Swit_3264
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
       0.538
Swit_3263
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.506
Swit_3270
PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding.
 
  
 0.471
Swit_4279
2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding.
 
  
 0.447
Swit_0647
TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; Belongs to the HIBADH-related family.
  
 0.421
Swit_2395
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Ketopantoate reductase ApbA/PanE, N-terminal domain protein.
  
 0.420
Swit_1634
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain.
 
  
 0.411
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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