STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3299PFAM: regulatory protein, TetR. (216 aa)    
Predicted Functional Partners:
Swit_3301
Hypothetical protein.
   
 
 0.550
Swit_3300
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
     
 0.526
Swit_3302
Hypothetical protein.
       0.513
Swit_3303
PFAM: short-chain dehydrogenase/reductase SDR.
       0.492
Swit_3304
PFAM: Xylose isomerase domain protein TIM barrel.
       0.492
Swit_3305
PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding.
       0.492
Swit_3297
PFAM: coenzyme A transferase.
     
 0.488
Swit_3298
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.482
Swit_3296
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
       0.479
Swit_3306
PFAM: AMP-dependent synthetase and ligase.
     
 0.420
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.