Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3300PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. (337 aa)    
Predicted Functional Partners:
Swit_3302
Hypothetical protein.
       0.870
Swit_3305
PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding.
 
  
 0.865
Swit_3018
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
 
 
 0.843
Swit_3301
Hypothetical protein.
   
 
 0.838
Swit_3303
PFAM: short-chain dehydrogenase/reductase SDR.
  
  
 0.797
Swit_3304
PFAM: Xylose isomerase domain protein TIM barrel.
     
 0.788
Swit_3306
PFAM: AMP-dependent synthetase and ligase.
  
  
 0.633
Swit_1179
TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 
  
 0.616
Swit_3299
PFAM: regulatory protein, TetR.
     
 0.526
Swit_0269
PFAM: Catalase domain protein.
  
 
 0.490
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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