STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3304PFAM: Xylose isomerase domain protein TIM barrel. (283 aa)    
Predicted Functional Partners:
Swit_3305
PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding.
  
  
 0.896
Swit_3301
Hypothetical protein.
       0.835
Swit_3302
Hypothetical protein.
       0.835
Swit_3303
PFAM: short-chain dehydrogenase/reductase SDR.
  
  
 0.835
Swit_3300
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
     
 0.812
Swit_3306
PFAM: AMP-dependent synthetase and ligase.
  
  
 0.657
Swit_1073
TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase.
 
   
 0.497
Swit_1072
TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase.
 
   
 0.493
Swit_3299
PFAM: regulatory protein, TetR.
       0.492
Swit_1782
PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein.
 
   
 0.431
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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