Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3307PFAM: Rieske [2Fe-2S] domain protein. (357 aa)    
Predicted Functional Partners:
Swit_1830
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.
  
  
 0.930
Swit_1839
3-oxosteroid 1-dehydrogenase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.
  
  
 0.930
Swit_3358
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
  
 0.929
Swit_0325
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
  
 0.923
Swit_1829
PFAM: Rieske [2Fe-2S] domain protein.
  
  
 
0.908
Swit_2053
PFAM: Rieske [2Fe-2S] domain protein.
  
  
 
0.903
Swit_3298
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.721
Swit_1826
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.718
Swit_2071
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
   
 0.709
Swit_3296
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
   
 0.709
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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