STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3309PFAM: alpha/beta hydrolase fold. (321 aa)    
Predicted Functional Partners:
Swit_3308
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding.
  
    0.819
Swit_3338
PFAM: alpha/beta hydrolase fold.
  
     0.685
Swit_1827
PFAM: alpha/beta hydrolase fold.
  
     0.623
Swit_0144
Hypothetical protein.
  
     0.616
Swit_3307
PFAM: Rieske [2Fe-2S] domain protein.
   
 
 0.609
Swit_0888
PFAM: alpha/beta hydrolase fold.
  
     0.600
Swit_1546
PFAM: alpha/beta hydrolase fold.
  
     0.599
Swit_4183
PFAM: alpha/beta hydrolase fold.
  
     0.586
Swit_3858
PFAM: alpha/beta hydrolase fold.
  
     0.568
Swit_4215
PFAM: alpha/beta hydrolase fold.
  
   
 0.558
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.