Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3313PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (269 aa)    
Predicted Functional Partners:
Swit_3314
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.808
Swit_4245
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR.
 
 
 
 0.790
Swit_0352
PFAM: short-chain dehydrogenase/reductase SDR.
 
 
 
 0.785
Swit_0925
PFAM: short-chain dehydrogenase/reductase SDR.
 
 
 
 0.784
Swit_1658
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.
 
 
 
 0.782
Swit_1669
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.
 
 
 
 0.781
Swit_2078
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR.
 
 
 
 0.777
Swit_3303
PFAM: short-chain dehydrogenase/reductase SDR.
 
 
 
 0.776
Swit_3289
PFAM: short-chain dehydrogenase/reductase SDR; KR.
 
 
 
 0.765
Swit_3280
PFAM: short-chain dehydrogenase/reductase SDR; KR.
  
     0.757
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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