STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3315Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type. (281 aa)    
Predicted Functional Partners:
Swit_0309
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.816
Swit_1911
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.743
Swit_4177
PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.677
Swit_1540
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.675
Swit_4347
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.640
Swit_3316
PFAM: AMP-dependent synthetase and ligase.
       0.589
Swit_2039
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
     0.565
Swit_3317
PFAM: acyl-CoA dehydrogenase domain protein.
       0.553
Swit_3319
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
       0.552
Swit_3320
PFAM: MaoC domain protein dehydratase.
       0.552
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.