Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_3320PFAM: MaoC domain protein dehydratase. (132 aa)    
Predicted Functional Partners:
Swit_3318
PFAM: protein of unknown function DUF35.
 0.998
Swit_3321
Acetyl-CoA acetyltransferase-like protein.
 
 0.996
Swit_3317
PFAM: acyl-CoA dehydrogenase domain protein.
 
 0.979
Swit_3319
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
 0.952
Swit_3316
PFAM: AMP-dependent synthetase and ligase.
 
   
 0.855
Swit_3634
PFAM: short-chain dehydrogenase/reductase SDR; KR.
 
 0.846
Swit_2015
PFAM: protein of unknown function DUF35.
 
 
 0.840
Swit_2016
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.831
Swit_3633
PFAM: acyl-CoA dehydrogenase domain protein.
 
 0.830
Swit_3628
PFAM: acyl-CoA dehydrogenase domain protein.
 
 0.829
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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