STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3336PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (741 aa)    
Predicted Functional Partners:
Swit_3335
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.
  
    0.775
Swit_3032
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.751
Swit_4318
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.708
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.707
Swit_2291
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
   
 0.663
Swit_3334
PFAM: short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.639
Swit_3144
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.625
Swit_0540
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
   
 0.618
Swit_1078
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
  
 0.521
Swit_3580
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.521
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.