Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3337PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain. (400 aa)    
Predicted Functional Partners:
Swit_1826
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
  0.976
Swit_3298
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
  0.976
Swit_1848
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
  0.975
Swit_2312
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
  
 
0.927
Swit_3338
PFAM: alpha/beta hydrolase fold.
 
 0.920
Swit_3339
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.
 
 
 0.916
Swit_1828
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
  
 
0.912
Swit_3335
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.
 
 
 0.871
Swit_3334
PFAM: short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  0.860
Swit_3296
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
 
 0.819
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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