Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3344Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR. (202 aa)    
Predicted Functional Partners:
Swit_1553
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
  
     0.765
Swit_3345
PFAM: amidohydrolase; Amidohydrolase 3.
 
     0.660
Swit_3348
Uncharacterized protein involved in ubiquinone biosynthesis-like protein.
 
     0.641
Swit_3346
Hypothetical protein.
       0.590
Swit_3347
Hypothetical protein.
       0.590
Swit_1551
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
  
   
 0.540
Swit_0952
Hypothetical protein.
  
   
 0.532
Swit_3349
Hypothetical protein.
       0.526
Swit_4331
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
  
     0.451
Swit_1911
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
   
 0.431
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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