Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3348Uncharacterized protein involved in ubiquinone biosynthesis-like protein. (277 aa)    
Predicted Functional Partners:
Swit_2449
TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein.
   
 0.841
coq7
Ubiquinone biosynthesis protein COQ7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
    
 0.815
Swit_3345
PFAM: amidohydrolase; Amidohydrolase 3.
       0.808
Swit_3346
Hypothetical protein.
       0.808
Swit_3347
Hypothetical protein.
       0.808
Swit_3349
Hypothetical protein.
       0.714
Swit_3664
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding.
  
 
 0.650
Swit_3344
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
 
     0.641
Swit_1187
PFAM: Methyltransferase type 12.
    
 0.564
Swit_4011
PFAM: Methyltransferase type 11; Methyltransferase type 12.
    
 0.564
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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