Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3356PFAM: regulatory protein, LuxR. (373 aa)    
Predicted Functional Partners:
Swit_3340
PFAM: regulatory protein, LuxR.
  
     0.760
Swit_3641
Hypothetical protein.
  
     0.750
Swit_3293
Hypothetical protein.
 
     0.746
Swit_3292
Hypothetical protein.
  
     0.743
Swit_3302
Hypothetical protein.
  
     0.735
Swit_2071
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
     0.734
Swit_3296
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
     0.734
Swit_3328
Hypothetical protein.
  
     0.701
Swit_0338
Hypothetical protein.
  
     0.686
Swit_3329
Hypothetical protein.
 
     0.683
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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