Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3359Hypothetical protein. (206 aa)    
Predicted Functional Partners:
Swit_3360
PFAM: NADH:flavin oxidoreductase/NADH oxidase.
       0.814
Swit_3358
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
     0.750
Swit_1852
Hypothetical protein.
 
     0.727
Swit_3296
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
     0.713
Swit_2071
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
     0.700
Swit_3301
Hypothetical protein.
  
     0.676
Swit_1829
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.664
Swit_3365
PFAM: NAD-dependent epimerase/dehydratase.
 
  
 0.657
Swit_3624
PFAM: protein of unknown function DUF35.
 
     0.633
Swit_3297
PFAM: coenzyme A transferase.
 
     0.599
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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