Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
Swit_3383Hypothetical protein. (309 aa)    
Predicted Functional Partners:
Swit_3384
PFAM: Resolvase, N-terminal domain; Recombinase.
       0.773
Swit_3385
Hypothetical protein.
       0.714
Swit_4696
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.704
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
  
 0.683
Swit_2291
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.678
Swit_0794
PFAM: Tetratricopeptide TPR_4.
  
 0.673
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
     0.649
Swit_3766
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
     0.641
Swit_0742
2-keto-4-pentenoate hydratase-like protein.
  
     0.636
Swit_3449
TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like.
  
 0.627
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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