Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3384PFAM: Resolvase, N-terminal domain; Recombinase. (590 aa)    
Predicted Functional Partners:
Swit_3383
Hypothetical protein.
       0.773
Swit_3385
Hypothetical protein.
       0.714
Swit_1578
PFAM: DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.550
Swit_3386
Transcriptional modulator of MazE/toxin, MazF; PFAM: PemK family protein.
     
 0.515
Swit_3379
PFAM: glycosyl transferase, family 2.
     
 0.514
Swit_3380
PFAM: glycosyl transferase, family 2.
     
 0.514
Swit_3378
PFAM: ABC transporter related; SMART: AAA ATPase.
     
 0.512
Swit_3377
Hypothetical protein.
       0.501
Swit_3381
Hpr(Ser) kinase/phosphatase.
       0.501
Swit_3382
Hypothetical protein.
       0.501
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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