Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3392Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR. (140 aa)    
Predicted Functional Partners:
Swit_3268
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
     0.694
Swit_0776
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
  
 0.668
Swit_4775
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
     0.648
Swit_0777
Hypothetical protein.
 
     0.642
Swit_3352
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain.
 
   
 0.633
Swit_3058
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain.
 
   
 0.616
Swit_3526
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
  
 0.605
Swit_3393
PFAM: ferredoxin; cytochrome P450; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
     
 0.603
Swit_3865
TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.596
Swit_1557
PFAM: homogentisate 1,2-dioxygenase.
 
   
 0.544
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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