Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Swit_3394PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like. (265 aa)    
Predicted Functional Partners:
Swit_4339
TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like.
  
     0.639
Swit_4127
PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like.
  
     0.609
Swit_3042
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
  
 0.533
Swit_1714
PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like.
  
     0.523
Swit_0314
PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like.
  
     0.488
Swit_2110
PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like.
  
     0.483
Swit_0819
Gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel domain protein.
 
   
 0.467
Swit_1882
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
  
 0.456
Swit_1638
PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like.
  
     0.442
Swit_3096
PFAM: ferredoxin; cytochrome P450; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
 
   
 0.430
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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