Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3400PFAM: L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (393 aa)    
Predicted Functional Partners:
Swit_1850
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 
 0.933
Swit_3317
PFAM: acyl-CoA dehydrogenase domain protein.
  
 
 0.933
Swit_3319
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 
 0.933
Swit_3403
PFAM: short-chain dehydrogenase/reductase SDR; KR.
 
 
 0.816
Swit_3397
PFAM: acyl-CoA dehydrogenase domain protein.
 
 
 0.805
Swit_3398
PFAM: acyl-CoA dehydrogenase domain protein.
  
 
 0.780
Swit_3401
Acetyl-CoA acetyltransferase-like protein.
  
  
 0.742
Swit_3402
PFAM: protein of unknown function DUF35.
       0.731
Swit_3399
PFAM: AMP-dependent synthetase and ligase.
     
 0.701
Swit_3404
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; PFAM: MaoC domain protein dehydratase.
  
 
 0.660
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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