STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3402PFAM: protein of unknown function DUF35. (136 aa)    
Predicted Functional Partners:
Swit_3401
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.973
Swit_1971
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.889
Swit_3651
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.889
Swit_1835
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.888
Swit_2103
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.888
Swit_2016
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.887
Swit_0342
Propanoyl-CoA C-acyltransferase.
 
 
 0.885
Swit_2277
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.885
Swit_3321
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.885
Swit_4607
Acetyl-CoA acetyltransferase-like protein.
 
 
 0.854
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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