Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3405Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR. (207 aa)    
Predicted Functional Partners:
Swit_3404
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; PFAM: MaoC domain protein dehydratase.
     
 0.643
Swit_3402
PFAM: protein of unknown function DUF35.
 
     0.504
Swit_2076
PFAM: dihydrodipicolinate reductase.
  
     0.501
Swit_3401
Acetyl-CoA acetyltransferase-like protein.
  
  
 0.463
Swit_2109
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
  
     0.460
Swit_4386
Hypothetical protein.
 
  
 0.454
Swit_3403
PFAM: short-chain dehydrogenase/reductase SDR; KR.
       0.445
Swit_3400
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
    0.417
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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