Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3407PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (202 aa)    
Predicted Functional Partners:
Swit_3408
Hypothetical protein.
 
   
 0.877
Swit_3409
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
     
 0.761
Swit_3411
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR.
 
     0.729
Swit_3410
PFAM: Rieske [2Fe-2S] domain protein.
     
 0.680
Swit_3406
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.503
Swit_1036
PFAM: nitroreductase.
 
  
 0.494
Swit_1973
PFAM: nitroreductase.
 
  
 0.493
Swit_1015
Hypothetical protein.
 
   
 0.448
Swit_0776
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
   
 0.443
Swit_3526
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
   
 0.429
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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