Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Swit_3408Hypothetical protein. (417 aa)    
Predicted Functional Partners:
Swit_3407
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
   
 0.877
Swit_3409
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
     
 0.760
Swit_1041
Hypothetical protein.
 
   
 0.682
Swit_3410
PFAM: Rieske [2Fe-2S] domain protein.
     
 0.679
Swit_3411
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR.
       0.656
Swit_2069
PFAM: amidohydrolase 2.
  
     0.648
Swit_3094
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.580
Swit_1024
Limonene-1,2-epoxide hydrolase; PFAM: protein of unknown function DUF1486; Limonene-1,2-epoxide hydrolase.
  
     0.538
Swit_3406
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.503
Swit_0313
PFAM: amidohydrolase 2.
  
     0.486
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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